U Ph? @sdZddlmZddlZddlmZddlmZddlZ ddl Z ddl m Z ddl mZmZddlmZmZmZdd lmZdd lmZdd lmZmZed d d\ZZeddd\ZZe"e de!eddd\Z"Z#W5QRXeddd\Z$Z%eddd\Z&Z'dddddddddd d!g Z(Gd"ddeZ)Gd#ddeZ*Gd$ddeZ+Gd%ddeZ,Gd&ddeZ-Gd'ddeZ.Gd(ddeZ/Gd)ddeZ0Gd*ddeZ1Gd+d d eZ2Gd,d!d!eZ3dS)-z3 A collection of transforms for signal operations. ) annotationsN)Sequence)Any)NdarrayOrTensor)RandomizableTransform Transform)check_boundariespaste squarepulse)optional_import)TransformBackends)convert_data_typeconvert_to_tensorzscipy.ndimage.interpolationshift)namez scipy.signaliirnotchignoreztorchaudio.functionalfiltfiltZpywtcentral_frequencycwtSignalRandDropSignalRandScaleSignalRandShiftSignalRandAddSineSignalRandAddSquarePulseSignalRandAddGaussianNoiseSignalRandAddSinePartialSignalRandAddSquarePulsePartialSignalFillEmptySignalRemoveFrequencySignalContinuousWaveletcsJeZdZdZejejgZdddddd fd d Zd d d ddZ Z S)rz* Apply a random shift on a signal wrapg?z str | None float | NoneSequence[float]None)modefilling boundariesreturncs(tt|||_||_||_dS)u3 Args: mode: define how the extension of the input array is done beyond its boundaries, see for more details : https://docs.scipy.org/doc/scipy/reference/generated/scipy.ndimage.shift.html. filling: value to fill past edges of input if mode is ‘constant’. Default is 0.0. see for mode details : https://docs.scipy.org/doc/scipy/reference/generated/scipy.ndimage.shift.html. boundaries: list defining lower and upper boundaries for the signal shift, default : ``[-1.0, 1.0]`` N)super__init__rr)r(r*)selfr(r)r* __class__R/home/dell461/cl/sdc2/HISourceFinder-master-l/src/monai/transforms/signal/array.pyr-=s zSignalRandShift.__init__rsignalr+cCsl|d|jj|jd|jdd|_|jd}t|j|}t|tj d}t t ||j ||j d}|S)zR Args: signal: input 1 dimension signal to be shifted Nrlowhigh)inputr(rcval) randomizeRuniformr* magnitudeshaperoundr npndarrayrrr(r))r.r4lengthZ shift_idxsigr1r1r2__call__Ns  zSignalRandShift.__call__)r!r"r#) __name__ __module__ __qualname____doc__r NUMPYTORCHbackendr-rE __classcell__r1r1r/r2r6s csFeZdZdZejejgZd dddfdd Zddd d d Z Z S) rz. Apply a random rescaling on a signal r#r&r'r*r+cstt|||_dS)z Args: boundaries: list defining lower and upper boundaries for the signal scaling, default : ``[-1.0, 1.0]`` Nr,r-rr*r.r*r/r1r2r-cs zSignalRandScale.__init__rr3cCs:|d|jj|jd|jdd|_t|j|}|S)zQ Args: signal: input 1 dimension signal to be scaled Nrr5r6)r;r<r=r*r>rr.r4r1r1r2rEls zSignalRandScale.__call__)r# rFrGrHrIr rKrJrLr-rErMr1r1r/r2r\s  csFeZdZdZejejgZd dddfdd Zddd d d Z Z S) rz- Randomly drop a portion of a signal r"r$r&r'rNcstt|||_dS)z Args: boundaries: list defining lower and upper boundaries for the signal drop, lower and upper values need to be positive default : ``[0.0, 1.0]`` NrOrPr/r1r2r-s zSignalRandDrop.__init__rr3cCs~|d|jj|jd|jdd|_|jd}tt|j|}t |}|t d| dd}t t |||f}|S)zR Args: signal: input 1 dimension signal to be dropped Nrr5r6)r5)r;r<r=r*r>r?torchzerosr@arangerandintsizerr )r.r4rCmasktrangelocr1r1r2rEs   zSignalRandDrop.__call__)rSrRr1r1r/r2rxs  csHeZdZdZejejgZd ddddfdd Zd d d d d Z Z S)rz< Add a random sinusoidal signal to the input signal g?g333333?gMbP?g{Gz?r&r'r* frequenciesr+cs"tt|||_||_dS)a\ Args: boundaries: list defining lower and upper boundaries for the sinusoidal magnitude, lower and upper values need to be positive ,default : ``[0.1, 0.3]`` frequencies: list defining lower and upper frequencies for sinusoidal signal generation ,default : ``[0.001, 0.02]`` Nr,r-rr*r`r.r*r`r/r1r2r-s zSignalRandAddSine.__init__rr3cCs|d|jj|jd|jdd|_|jj|jd|jdd|_|jd}t d|d}t |j|}|jt |}t ||}|S)zm Args: signal: input 1 dimension signal to which sinusoidal signal will be added Nrr5r6) r;r<r=r*r>r`freqsr?rArWrrUsin)r.r4rCtimedatasiner1r1r2rEs   zSignalRandAddSine.__call__)r]r^rRr1r1r/r2rs  csHeZdZdZejejgZd ddddfdd Zd d d d d Z Z S)rz> Add a random square pulse signal to the input signal g{Gz?g?r^r&r'r_cs"tt|||_||_dS)ag Args: boundaries: list defining lower and upper boundaries for the square pulse magnitude, lower and upper values need to be positive , default : ``[0.01, 0.2]`` frequencies: list defining lower and upper frequencies for the square pulse signal generation , default : ``[0.001, 0.02]`` Nrarbr/r1r2r-s z!SignalRandAddSquarePulse.__init__rr3cCs|d|jj|jd|jdd|_|jj|jd|jdd|_|jd}t d|d}|jt |j|}t ||}|S)zh Args: signal: input 1 dimension signal to which square pulse will be added Nrr5r6) r;r<r=r*r>r`rcr?rArWr r)r.r4rCreZ squaredpulser1r1r2rEs   z!SignalRandAddSquarePulse.__call__)rhr^rRr1r1r/r2rs  csJeZdZdZejejgZddddddfdd Zd d d d d Z Z S)rzD Add a random partial sinusoidal signal to the input signal r]r^rhr&r'r*r`fractionr+cs(tt|||_||_||_dS)a Args: boundaries: list defining lower and upper boundaries for the sinusoidal magnitude, lower and upper values need to be positive , default : ``[0.1, 0.3]`` frequencies: list defining lower and upper frequencies for sinusoidal signal generation , default : ``[0.001, 0.02]`` fraction: list defining lower and upper boundaries for partial signal generation default : ``[0.01, 0.2]`` Nr,r-rr*r`rjr.r*r`rjr/r1r2r-s  z!SignalRandAddSinePartial.__init__rr3cCs|d|jj|jd|jdd|_|jj|jd|jdd|_|jj|jd|jdd|_|j d}t dt |j|d}t |j|}|jt|}t jt|}t|||f}|S)z Args: signal: input 1 dimension signal to which a partial sinusoidal signal will be added Nrr5r6rT)r;r<r=r*r>rjfracsr`rcr?rArWr@rrUrdrandomchoiceranger )r.r4rC time_partialrfZ sine_partialr\r1r1r2rEs  z!SignalRandAddSinePartial.__call__)r]r^rhrRr1r1r/r2rs csFeZdZdZejejgZd dddfdd Zddd d d Z Z S) rz9 Add a random gaussian noise to the input signal r^r&r'rNcstt|||_dS)z Args: boundaries: list defining lower and upper boundaries for the signal magnitude, default : ``[0.001,0.02]`` NrOrPr/r1r2r-!s z#SignalRandAddGaussianNoise.__init__rr3cCsR|d|jj|jd|jdd|_|jd}|jt|}t||}|S)zj Args: signal: input 1 dimension signal to which gaussian noise will be added Nrr5r6) r;r<r=r*r>r?rUrandnr)r.r4rCZ gaussiannoiser1r1r2rE+s    z#SignalRandAddGaussianNoise.__call__)r^rRr1r1r/r2rs  csJeZdZdZejejgZd dddddfdd Zd d d d d Z Z S)rz7 Add a random partial square pulse to a signal rhr^r&r'rics(tt|||_||_||_dS)a Args: boundaries: list defining lower and upper boundaries for the square pulse magnitude, lower and upper values need to be positive , default : ``[0.01, 0.2]`` frequencies: list defining lower and upper frequencies for square pulse signal generation example : ``[0.001, 0.02]`` fraction: list defining lower and upper boundaries for partial square pulse generation default: ``[0.01, 0.2]`` Nrkrlr/r1r2r-As  z(SignalRandAddSquarePulsePartial.__init__rr3cCs|d|jj|jd|jdd|_|jj|jd|jdd|_|jj|jd|jdd|_|j d}t dt |j|d}|jt |j|}t jt|}t|||f}|S)zr Args: signal: input 1 dimension signal to which a partial square pulse will be added Nrr5r6rT)r;r<r=r*r>rjrmr`rcr?rArWr@r rnrorpr )r.r4rCrqZsquaredpulse_partialr\r1r1r2rEVs  z(SignalRandAddSquarePulsePartial.__call__)rhr^rhrRr1r1r/r2r:s csFeZdZdZejejgZd dddfdd Zddd d d Z Z S) rz. replace empty part of a signal (NaN) r"floatr') replacementr+cst||_dS)zU Args: replacement: value to replace nan items in signal N)r,r-rt)r.rtr/r1r2r-rs zSignalFillEmpty.__init__rr3cCstjt|dd|jd}|S)z? Args: signal: signal to be filled T) track_meta)nan)rU nan_to_numrrtrQr1r1r2rEzszSignalFillEmpty.__call__)r"rRr1r1r/r2rks csJeZdZdZejejgZd dddddfdd Zdd d d d Z Z S)rz* Remove a frequency from a signal Nr%r') frequencyquality_factor sampling_freqr+cs t||_||_||_dS)a: Args: frequency: frequency to be removed from the signal quality_factor: quality factor for notch filter see : https://docs.scipy.org/doc/scipy/reference/generated/scipy.signal.iirnotch.html sampling_freq: sampling frequency of the input signal N)r,r-rxryrz)r.rxryrzr/r1r2r-s zSignalRemoveFrequency.__init__ np.ndarrayrr3cCs4tt|j|j|jtjd\}}tt|||}|S)zJ Args: signal: signal to be frequency removed )dtype)rrrxryrzrUrsr)r.r4Zb_notchZa_notchZ y_notchedr1r1r2rEs  zSignalRemoveFrequency.__call__)NNNrRr1r1r/r2rs csFeZdZdZejgZddddddfd d Zd d d ddZZ S)r z; Generate continuous wavelet transform of a signal mexh@_@@@strrsr')typerCrxr+cs t||_||_||_dS)aY Args: type: mother wavelet type. Available options are: {``"mexh"``, ``"morl"``, ``"cmorB-C"``, , ``"gausP"``} see : https://pywavelets.readthedocs.io/en/latest/ref/cwt.html length: expected length, default ``125.0`` frequency: signal frequency, default ``500.0`` N)r,r-rxrCr)r.rrCrxr/r1r2r-s z SignalContinuousWavelet.__init__r{rr3cCsZ|j}td|jdd}t||j|}t|||d|j\}}t|dddg}|S)ze Args: signal: signal for which to generate continuous wavelet transform r5r$r)rrArWrCrrxr transpose)r.r4Zmother_waveletZspreadscalescoeffs_r1r1r2rEs z SignalContinuousWavelet.__call__)r}r~r) rFrGrHrIr rJrLr-rErMr1r1r/r2r s)4rI __future__rwarningscollections.abcrtypingrnumpyrArUmonai.config.type_definitionsrmonai.transforms.transformrrmonai.transforms.utilsrr r monai.utilsr monai.utils.enumsr monai.utils.type_conversionr rrZ has_shiftrZ has_iirnotchcatch_warnings simplefilter UserWarningrZ has_filtfiltrZhas_central_frequencyrZhas_cwt__all__rrrrrrrrrrr r1r1r1r2 sT        &"'&3 1#