o
    i?                     @  s  d Z ddlmZ ddlZddlmZ ddlmZ ddlZ	ddl
Z
ddlmZ ddlmZmZ ddlmZmZmZ dd	lmZ dd
lmZ ddlmZmZ eddd\ZZeddd\ZZe  e de! eddd\Z"Z#W d   n1 syw   Y  eddd\Z$Z%eddd\Z&Z'g dZ(G dd deZ)G dd deZ*G dd deZ+G dd deZ,G d d! d!eZ-G d"d# d#eZ.G d$d% d%eZ/G d&d' d'eZ0G d(d) d)eZ1G d*d+ d+eZ2G d,d- d-eZ3dS ).z3
A collection of transforms for signal operations.
    )annotationsN)Sequence)Any)NdarrayOrTensor)RandomizableTransform	Transform)check_boundariespastesquarepulse)optional_import)TransformBackends)convert_data_typeconvert_to_tensorzscipy.ndimageshift)namezscipy.signaliirnotchignoreztorchaudio.functionalfiltfiltZpywtcentral_frequencycwt)SignalRandDropSignalRandScaleSignalRandShiftSignalRandAddSineSignalRandAddSquarePulseSignalRandAddGaussianNoiseSignalRandAddSinePartialSignalRandAddSquarePulsePartialSignalFillEmptySignalRemoveFrequencySignalContinuousWaveletc                      s<   e Zd ZdZejejgZ	dd fddZdddZ	  Z
S )r   z*
    Apply a random shift on a signal
    wrap        g            ?mode
str | Nonefillingfloat | None
boundariesSequence[float]returnNonec                   s(   t    t| || _|| _|| _dS )u3  
        Args:
            mode: define how the extension of the input array is done beyond its boundaries, see for more details :
                https://docs.scipy.org/doc/scipy/reference/generated/scipy.ndimage.shift.html.
            filling: value to fill past edges of input if mode is ‘constant’. Default is 0.0. see for mode details :
                https://docs.scipy.org/doc/scipy/reference/generated/scipy.ndimage.shift.html.
            boundaries: list defining lower and upper boundaries for the signal shift, default : ``[-1.0, 1.0]``
        N)super__init__r   r'   r%   r)   )selfr%   r'   r)   	__class__ _/home/dell461/cl/sdc2/last_ska_mid/HISourceFinder-master-l/src/monai/transforms/signal/array.pyr.   =   s
   

zSignalRandShift.__init__signalr   c                 C  sl   |  d | jj| jd | jd d| _|jd }t| j| }t|tj	d }t
t|| j|| jd}|S )zR
        Args:
            signal: input 1 dimension signal to be shifted
        Nr      lowhigh)inputr%   r   cval)	randomizeRuniformr)   	magnitudeshaperoundr   npndarrayr   r   r%   r'   )r/   r4   lengthZ	shift_idxsigr2   r2   r3   __call__N   s   

zSignalRandShift.__call__)r!   r"   r#   )r%   r&   r'   r(   r)   r*   r+   r,   r4   r   r+   r   )__name__
__module____qualname____doc__r   NUMPYTORCHbackendr.   rE   __classcell__r2   r2   r0   r3   r   6   s    r   c                      :   e Zd ZdZejejgZdd fddZdddZ	  Z
S )r   z.
    Apply a random rescaling on a signal
    r#   r)   r*   r+   r,   c                      t    t| || _dS )z
        Args:
            boundaries: list defining lower and upper boundaries for the signal scaling, default : ``[-1.0, 1.0]``
        Nr-   r.   r   r)   r/   r)   r0   r2   r3   r.   c   s   

zSignalRandScale.__init__r4   r   c                 C  s:   |  d | jj| jd | jd d| _t| j| }|S )zQ
        Args:
            signal: input 1 dimension signal to be scaled
        Nr   r5   r6   )r;   r<   r=   r)   r>   r   r/   r4   r2   r2   r3   rE   l   s   
zSignalRandScale.__call__)r#   r)   r*   r+   r,   rF   rG   rH   rI   rJ   r   rL   rK   rM   r.   rE   rN   r2   r2   r0   r3   r   \   s
    	r   c                      rO   )r   z-
    Randomly drop a portion of a signal
    r"   r$   r)   r*   r+   r,   c                   rP   )z
        Args:
            boundaries: list defining lower and upper boundaries for the signal drop,
            lower and upper values need to be positive default : ``[0.0, 1.0]``
        NrQ   rR   r0   r2   r3   r.         

zSignalRandDrop.__init__r4   r   c                 C  s~   |  d | jj| jd | jd d| _|jd }tt| j| }t	|}|t
d|dd }tt|||f}|S )zR
        Args:
            signal: input 1 dimension signal to be dropped
        Nr   r5   r6   )r5   )r;   r<   r=   r)   r>   r?   torchzerosr@   arangerandintsizer   r	   )r/   r4   rC   masktrangelocr2   r2   r3   rE      s   


zSignalRandDrop.__call__)rV   rT   rF   rU   r2   r2   r0   r3   r   x   
    
r   c                      :   e Zd ZdZejejgZdd fd	d
ZdddZ	  Z
S )r   z<
    Add a random sinusoidal signal to the input signal
    g?g333333?gMbP?g{Gz?r)   r*   frequenciesr+   r,   c                   "   t    t| || _|| _dS )a\  
        Args:
            boundaries: list defining lower and upper boundaries for the sinusoidal magnitude,
                lower and upper values need to be positive ,default : ``[0.1, 0.3]``
            frequencies: list defining lower and upper frequencies for sinusoidal
                signal generation ,default : ``[0.001, 0.02]``
        Nr-   r.   r   r)   re   r/   r)   re   r0   r2   r3   r.         

zSignalRandAddSine.__init__r4   r   c                 C  s   |  d | jj| jd | jd d| _| jj| jd | jd d| _|jd }t	d|d}t
| j| }| jt| }t
|| }|S )zm
        Args:
            signal: input 1 dimension signal to which sinusoidal signal will be added
        Nr   r5   r6   )r;   r<   r=   r)   r>   re   freqsr?   rA   r[   r   rY   sin)r/   r4   rC   timedatasiner2   r2   r3   rE      s   

zSignalRandAddSine.__call__)rc   rd   r)   r*   re   r*   r+   r,   rF   rU   r2   r2   r0   r3   r      
    r   c                      rb   )r   z>
    Add a random square pulse signal to the input signal
    g{Gz?g?rd   r)   r*   re   r+   r,   c                   rf   )ag  
        Args:
            boundaries: list defining lower and upper boundaries for the square pulse magnitude,
                lower and upper values need to be positive , default : ``[0.01, 0.2]``
            frequencies: list defining lower and upper frequencies for the square pulse
                signal generation , default : ``[0.001, 0.02]``
        Nrg   rh   r0   r2   r3   r.      ri   z!SignalRandAddSquarePulse.__init__r4   r   c                 C  s   |  d | jj| jd | jd d| _| jj| jd | jd d| _|jd }t	d|d}| jt
| j|  }t|| }|S )zh
        Args:
            signal: input 1 dimension signal to which square pulse will be added
        Nr   r5   r6   )r;   r<   r=   r)   r>   re   rj   r?   rA   r[   r
   r   )r/   r4   rC   rl   Zsquaredpulser2   r2   r3   rE      s   

z!SignalRandAddSquarePulse.__call__)rq   rd   ro   rF   rU   r2   r2   r0   r3   r      rp   r   c                      s@   e Zd ZdZejejgZ			dd fddZdddZ	  Z
S )r   zD
    Add a random partial sinusoidal signal to the input signal
    rc   rd   rq   r)   r*   re   fractionr+   r,   c                   (   t    t| || _|| _|| _dS )a  
        Args:
            boundaries: list defining lower and upper boundaries for the sinusoidal magnitude,
                lower and upper values need to be positive , default : ``[0.1, 0.3]``
            frequencies: list defining lower and upper frequencies for sinusoidal
                signal generation , default : ``[0.001, 0.02]``
            fraction: list defining lower and upper boundaries for partial signal generation
                default : ``[0.01, 0.2]``
        Nr-   r.   r   r)   re   rr   r/   r)   re   rr   r0   r2   r3   r.      
   

z!SignalRandAddSinePartial.__init__r4   r   c                 C  s   |  d | jj| jd | jd d| _| jj| jd | jd d| _| jj| jd | jd d| _|j	d }t
dt| j| d}t| j| }| jt| }t
jt|}t|||f}|S )z
        Args:
            signal: input 1 dimension signal to which a partial sinusoidal signal
            will be added
        Nr   r5   r6   rX   )r;   r<   r=   r)   r>   rr   fracsre   rj   r?   rA   r[   r@   r   rY   rk   randomchoiceranger	   )r/   r4   rC   time_partialrm   Zsine_partialr`   r2   r2   r3   rE     s   

z!SignalRandAddSinePartial.__call__)rc   rd   rq   r)   r*   re   r*   rr   r*   r+   r,   rF   rU   r2   r2   r0   r3   r          r   c                      rO   )r   z9
    Add a random gaussian noise to the input signal
    rd   r)   r*   r+   r,   c                   rP   )z
        Args:
            boundaries: list defining lower and upper boundaries for the signal magnitude,
                default : ``[0.001,0.02]``
        NrQ   rR   r0   r2   r3   r.   !  rW   z#SignalRandAddGaussianNoise.__init__r4   r   c                 C  sR   |  d | jj| jd | jd d| _|jd }| jt| }t|| }|S )zj
        Args:
            signal: input 1 dimension signal to which gaussian noise will be added
        Nr   r5   r6   )	r;   r<   r=   r)   r>   r?   rY   randnr   )r/   r4   rC   Zgaussiannoiser2   r2   r3   rE   +  s   

z#SignalRandAddGaussianNoise.__call__)rd   rT   rF   rU   r2   r2   r0   r3   r     ra   r   c                      s@   e Zd ZdZejejgZ			dd fd
dZdddZ	  Z
S )r   z7
    Add a random partial square pulse to a signal
    rq   rd   r)   r*   re   rr   r+   r,   c                   rs   )a  
        Args:
            boundaries: list defining lower and upper boundaries for the square pulse magnitude,
                lower and upper values need to be positive , default : ``[0.01, 0.2]``
            frequencies: list defining lower and upper frequencies for square pulse
                signal generation example : ``[0.001, 0.02]``
            fraction: list defining lower and upper boundaries for partial square pulse generation
                default: ``[0.01, 0.2]``
        Nrt   ru   r0   r2   r3   r.   A  rv   z(SignalRandAddSquarePulsePartial.__init__r4   r   c                 C  s   |  d | jj| jd | jd d| _| jj| jd | jd d| _| jj| jd | jd d| _|j	d }t
dt| j| d}| jt| j|  }t
jt|}t|||f}|S )zr
        Args:
            signal: input 1 dimension signal to which a partial square pulse will be added
        Nr   r5   r6   rX   )r;   r<   r=   r)   r>   rr   rw   re   rj   r?   rA   r[   r@   r
   rx   ry   rz   r	   )r/   r4   rC   r{   Zsquaredpulse_partialr`   r2   r2   r3   rE   V  s   

z(SignalRandAddSquarePulsePartial.__call__)rq   rd   rq   r|   rF   rU   r2   r2   r0   r3   r   :  r}   r   c                      rO   )r   z.
    replace empty part of a signal (NaN)
    r"   replacementfloatr+   r,   c                   s   t    || _dS )zU
        Args:
            replacement: value to replace nan items in signal
        N)r-   r.   r   )r/   r   r0   r2   r3   r.   r  s   

zSignalFillEmpty.__init__r4   r   c                 C  s   t jt|dd| jd}|S )z?
        Args:
            signal: signal to be filled
        T)
track_meta)nan)rY   
nan_to_numr   r   rS   r2   r2   r3   rE   z  s   zSignalFillEmpty.__call__)r"   )r   r   r+   r,   rF   rU   r2   r2   r0   r3   r   k  s
    r   c                      s<   e Zd ZdZejejgZ	dd fd	d
ZdddZ	  Z
S )r   z*
    Remove a frequency from a signal
    N	frequencyr(   quality_factorsampling_freqr+   r,   c                   s    t    || _|| _|| _dS )a:  
        Args:
            frequency: frequency to be removed from the signal
            quality_factor: quality factor for notch filter
                see : https://docs.scipy.org/doc/scipy/reference/generated/scipy.signal.iirnotch.html
            sampling_freq: sampling frequency of the input signal
        N)r-   r.   r   r   r   )r/   r   r   r   r0   r2   r3   r.     s   


zSignalRemoveFrequency.__init__r4   
np.ndarrayr   c                 C  s4   t t| j| j| jtjd\}}tt |||}|S )zJ
        Args:
            signal: signal to be frequency removed
        )dtype)r   r   r   r   r   rY   r   r   )r/   r4   Zb_notchZa_notchZ	y_notchedr2   r2   r3   rE     s
   
zSignalRemoveFrequency.__call__)NNN)r   r(   r   r(   r   r(   r+   r,   r4   r   r+   r   rU   r2   r2   r0   r3   r     s    r   c                      s6   e Zd ZdZejgZdd fddZdddZ  Z	S )r    z;
    Generate continuous wavelet transform of a signal
    mexh     @_@     @@typestrrC   r   r   r+   r,   c                   s    t    || _|| _|| _dS )aY  
        Args:
            type: mother wavelet type.
                Available options are: {``"mexh"``, ``"morl"``, ``"cmorB-C"``, , ``"gausP"``}
            see : https://pywavelets.readthedocs.io/en/latest/ref/cwt.html
            length: expected length, default ``125.0``
            frequency: signal frequency, default ``500.0``
        N)r-   r.   r   rC   r   )r/   r   rC   r   r0   r2   r3   r.     s   
	
z SignalContinuousWavelet.__init__r4   r   r   c                 C  sX   | j }td| jd d}t|| j | }t|||d| j \}}t|g d}|S )ze
        Args:
            signal: signal for which to generate continuous wavelet transform
        r5   r$   )r5   r      )r   rA   r[   rC   r   r   r   	transpose)r/   r4   Zmother_waveletZspreadscalescoeffs_r2   r2   r3   rE     s   z SignalContinuousWavelet.__call__)r   r   r   )r   r   rC   r   r   r   r+   r,   r   )
rG   rH   rI   rJ   r   rK   rM   r.   rE   rN   r2   r2   r0   r3   r      s
    r    )4rJ   
__future__r   warningscollections.abcr   typingr   numpyrA   rY   monai.config.type_definitionsr   monai.transforms.transformr   r   monai.transforms.utilsr   r	   r
   monai.utilsr   monai.utils.enumsr   monai.utils.type_conversionr   r   r   Z	has_shiftr   Zhas_iirnotchcatch_warningssimplefilterUserWarningr   Zhas_filtfiltr   Zhas_central_frequencyr   Zhas_cwt__all__r   r   r   r   r   r   r   r   r   r   r    r2   r2   r2   r3   <module>   sB   

&"'&3 1#