o  i3@sdddlmZddlmZddlmZddlmZmZddl m Z GdddeZ Gdd d eZ d S) ) annotations)Callable)IgniteMetricHandler)MetricsReloadedBinaryMetricsReloadedCategorical)MetricReductioncs4eZdZdZdejddddfdfdd ZZS)MetricsReloadedBinaryHandlerzg Handler of MetricsReloadedBinary, which wraps the binary pairwise metrics of MetricsReloaded. TFcC|SNxr r i/home/dell461/cl/sdc2/last_ska_mid/HISourceFinder-master-l/src/monai/handlers/metrics_reloaded_handler.py z%MetricsReloadedBinaryHandler. metric_namestrinclude_backgroundbool reductionMetricReduction | str get_not_nansoutput_transformr save_detailsreturnNonecs&t||||d}tj|||ddS)a Args: metric_name: Name of a binary metric from the MetricsReloaded package. include_background: whether to include computation on the first channel of the predicted output. Defaults to ``True``. reduction: define mode of reduction to the metrics, will only apply reduction on `not-nan` values, available reduction modes: {``"none"``, ``"mean"``, ``"sum"``, ``"mean_batch"``, ``"sum_batch"``, ``"mean_channel"``, ``"sum_channel"``}, default to ``"mean"``. if "none", will not do reduction. get_not_nans: whether to return the `not_nans` count, if True, aggregate() returns (metric, not_nans). Here `not_nans` count the number of not nans for the metric, thus its shape equals to the shape of the metric. output_transform: callable to extract `y_pred` and `y` from `ignite.engine.state.output` then construct `(y_pred, y)` pair, where `y_pred` and `y` can be `batch-first` Tensors or lists of `channel-first` Tensors. the form of `(y_pred, y)` is required by the `update()`. `engine.state` and `output_transform` inherit from the ignite concept: https://pytorch.org/ignite/concepts.html#state, explanation and usage example are in the tutorial: https://github.com/Project-MONAI/tutorials/blob/master/modules/batch_output_transform.ipynb. save_details: whether to save metric computation details per image, for example: TP/TN/FP/FN of every image. default to True, will save to `engine.state.metric_details` dict with the metric name as key. See also: :py:meth:`monai.metrics.wrapper` )rrrr metric_fnrrN)rsuper__init__)selfrrrrrrr __class__r rrs!z%MetricsReloadedBinaryHandler.__init__)rrrrrrrrrrrrrr__name__ __module__ __qualname____doc__rMEANr __classcell__r r r!rrsrcs6eZdZdZdejdddddfdfdd ZZS)!MetricsReloadedCategoricalHandlerzq Handler of MetricsReloadedCategorical, which wraps the categorical pairwise metrics of MetricsReloaded. TFgh㈵>cCr r r r r r rrPrz*MetricsReloadedCategoricalHandler.rrrrrrr smooth_drfloatrrrrrc s(t|||||d}tj|||ddS)a` Args: metric_name: Name of a categorical metric from the MetricsReloaded package. include_background: whether to include computation on the first channel of the predicted output. Defaults to ``True``. reduction: define mode of reduction to the metrics, will only apply reduction on `not-nan` values, available reduction modes: {``"none"``, ``"mean"``, ``"sum"``, ``"mean_batch"``, ``"sum_batch"``, ``"mean_channel"``, ``"sum_channel"``}, default to ``"mean"``. if "none", will not do reduction. get_not_nans: whether to return the `not_nans` count, if True, aggregate() returns (metric, not_nans). Here `not_nans` count the number of not nans for the metric, thus its shape equals to the shape of the metric. smooth_dr: a small constant added to the denominator to avoid nan. OBS: should be greater than zero. output_transform: callable to extract `y_pred` and `y` from `ignite.engine.state.output` then construct `(y_pred, y)` pair, where `y_pred` and `y` can be `batch-first` Tensors or lists of `channel-first` Tensors. the form of `(y_pred, y)` is required by the `update()`. `engine.state` and `output_transform` inherit from the ignite concept: https://pytorch.org/ignite/concepts.html#state, explanation and usage example are in the tutorial: https://github.com/Project-MONAI/tutorials/blob/master/modules/batch_output_transform.ipynb. save_details: whether to save metric computation details per image, for example: TP/TN/FP/FN of every image. default to True, will save to `engine.state.metric_details` dict with the metric name as key. See also: :py:meth:`monai.metrics.wrapper` )rrrrr+rN)rrr) r rrrrr+rrrr!r rrIs#z*MetricsReloadedCategoricalHandler.__init__)rrrrrrrrr+r,rrrrrrr#r r r!rr*Dsr*N) __future__rcollections.abcrmonai.handlers.ignite_metricr monai.metricsrrmonai.utils.enumsrrr*r r r rs   /